PROFESSOR R. I. JONES - PUBLICATIONS

PROFESSOR R. I. JONES - PUBLICATIONS Articles in refereed journals 143 Vesterinen, J., Syväranta, J., Devlin, S.P. & Jones, R.I. (2016). Periphyton support for littoral secondary production in a highly humic boreal lake. Freshwater Science 35: 1235-1247. 142 Rinta, P., van Hardenbroek, M., Jones, R.I., Kankaala, P., Rey, F., Szidal, S., Wooller,. M.J. & Heiri, O. (2016). Land use affects carbon sources to the pelagic food web in a small boreal lake. PLoS ONE 11(8): e0159900. doi:10.1371/journal.pone.0159900. 141 Saarenheimo, J., Aalto, S.L., Syväranta, J., Devlin, S.P., Tiirola, M. & Jones, R.I. (2016). Bacterial community response to changes in a tri-trophic cascade during a whole-lake fish manipulation. Ecology 97: 684-693. 140 Vesterinen, J., Devlin, S.P., Syväranta, J. & Jones, R.I. (2016). Accounting for littoral primary production by periphyton shifts a highly humic boreal lake towards net autotrophy. Freshwater Biology 61: 265-276. 139 Dorado-Garcıa, I., Syväranta, J., Devlin, S.P., Medina-Sanchez, J.M. & Jones, R.I. (2016). Experimental assessment of a possible microbial priming effect in a humic boreal lake. Aquat. Sci. 78: 191-202. 138 Devlin, S.P., Saarenheimo, J., Syväranta, J. & Jones, R.I. (2015). Top consumer abundance influences lake methane efflux. Nature Communications doi: 10.1038/ncomms9787. 137 Taipale, S.J., Peltomaa, E., Hiltunen, M., Jones, R.I., Hahn, M.W., Biasi, C. & Brett, M.T. (2015). Inferring phytoplankton, terrestrial plant and bacteria bulk d 13 C values from compound specific analyses of lipids and fatty acids. PLoS ONE 10(7): e0133974. doi:10.1371/journal.pone.0133974. 136 Ercoli, F., Ruokonen, T.J., Koistinen, S., Jones, R.I. & Hämäläinen, H. (2015). The introduced signal crayfish and native noble crayfish have different effects on sublittoral macroinvertebrate assemblages in boreal lakes. Freshwater Biology 60: 1688-1698. 135 Ercoli, F., Ruokonen, T.J., Erkamo, E., Jones, R.I. & Hämäläinen, H. (2015). Comparing the effects of introduced signal crayfish and native noble crayfish on the littoral invertebrate assemblages of boreal lakes. Freshwater Science 34: 555-563. 134 Eloranta, A.P., Kahilainen, K.K., Amundsen, P.-A., Knudsen, R., Harrod, C. & Jones, R.I. (2015). Lake size and fish diversity determine resource use and trophic position of a top predator in high-latitude lakes. Ecol. Evolut. 5: 1664-1675. 133 Peura, S., Bertilsson, S., Jones, R.I. & Eiler, A. (2015). Resistant microbial co-occurrence patterns inferred by network topology. Appl. Env. Microbiol. 81: 2090-2097. 132 Özdilek, S. & Jones, R.I. (2014). The diet composition and trophic position of introduced Prussian Carp Carassius gibelio (Bloch, 1782) and native fish species in a Turkish river- Turkish J. Fish. Aquat. Sci. 14: 769-776. 131 Ercoli, F., Ruokonen, T.J., Hämäläinen, H. & Jones, R.I. (2014). Does the introduced signal crayfish occupy an equivalent trophic niche to the lost native noble crayfish in boreal lakes? Biol. Invasions DOI 10.1007/s10530-014-0645-x 130 Cremona, F., Timm, H., Agasild, H., Tõnno I., Feldmann T., Jones, R.I. & Nõges, T. (2014). Benthic foodweb structure in a large shallow lake studied by stable isotope analysis. Freshwater Science 33: 885 894. 129 Mariash, H.L., Devlin, S.P., Forsström, L. Jones, R.I. & Rautio, M. (2014). Benthic mats offer a potential subsidy to pelagic consumers in tundra pond food webs. Limnol. Oceanogr. 59: 733-744. 128 Torniainen, J., Vuorinen, P.J., Jones, R.I., Keinänen, M., Palm, S., Vuori, K.A.M. & 1

Kiljunen, M. (2014). Migratory connectivity of two Baltic Sea salmon populations: retrospective analysis using stable isotopes of scales. ICES J. Marine Sci. 71: 336-344. 127 Peura, S., Nykänen, H., Kankaala, P., Eiler, A., Tiirola, M. & Jones, R.I. (2014). Enhanced greenhouse gas emissions and changes in plankton communities following an experimental increase in organic carbon loading to a humic lake. Biogeochemistry 118: 177-197. 126 Agasild, H., Zingel, P., Tuvikene, L., Tuvikene, A., Timm, H., Feldmann, T., Salujöe, J., Toming, K., Jones, R.I. & Nöges, T. (2014). Biogenic methane contributes to the food web of a large, shallow lake. Freshwater Biology 59: 272-285. 125 Pätynen, A., Elliott, J.A., Kiuru, P., Sarvala, J., Ventelä, A.-M. & Jones, R.I. (2014). Modelling the impact of higher temperature on the phytoplankton of a boreal lake. Boreal Env. Res. 19: 66-78. 124 Kankaala, P., Bellido, J.L., Ojala, A., Tulonen, T. & Jones, R.I. (2013). Variable production by different pelagic energy mobilizers in boreal lakes. Ecosystems 16: 1152-1164. 123 Toming, K., Tuvikene, L., Vilbaste, S., Agasild, H., Viik, M., Kisand, A., Feldmann, T.. Martma, T., Jones, R.I. & Nöges, T. (2013). Contributions of autochthonous and allochthonous sources to dissolved organic matter in a large, shallow, eutropic lake with a highly calcareous catchment. Limnol. Oceanogr. 58: 1259-1270. 122 Enyidi, U., Kiljunen, M., Jones, R.I., Pirhonen, J. & Vielma, J. (2013). Nutrient Assimilation by First-Feeding African Catfish, Clarias gariepinus, Assessed Using Stable Isotope Analysis. Journal of the World Aquaculture Society 44: 161 172. doi: 10.1111/jwas.12016 121 Jyväsjärvi, J., Boros, G., Jones, R.I. & Hämäläinen, H. (2013). The importance of sedimenting organic matter, relative to oxygen and temperature, in structuring lake profundal macroinvertebrate assemblages. Hydrobiologia 709: 55-72. 120 Syväranta. J, Lenssu, A., Marjomäki, T., Oksanen, S. & Jones, R.I. (2013). An empirical evaluation of the utility of convex hull and standard ellipse areas for assessing population niche widths from stable isotope data. PLoS ONE 8(2): e56094. doi:10.1371/journal.pone.0056094 119 Boros, G., Jyväsjärvi, J., Takács, P., Mozsár, A., Tátrai, I., Søndergaard, M. & Jones, R.I. (2012). Between-lake variation in the elemental composition of roach (Rutilus rutilus L.). Aquatic Ecol. in press. 118 Peura, S., Eiler, A., Bertilsson, S., Nykänen, H., Tiirola, M. & Jones, R.I. (2012). Distinct and diverse anaerobic bacterial communities in boreal lakes dominated by candidate division OD1. The ISME Journal 6: 1640-1652. 116 Peura, S., Eiler, A., Hiltunen, M., Nykänen, H., Tiirola, M. & Jones, R.I. (2012). Bacterial and phytoplankton responses to nutrient amendments in a boreal lake at different taxonomic resolutions. PLoS ONE 7(6): e38552. doi:10.1371/journal.pone.0038552 116 Jones, R.I. & Grey, J. (2011). Special Review Biogenic methane in freshwater food webs. Freshwater Biol. 56: 213-229. 115 Taipale, S., Kankaala, P., Hahn, M.W., Jones, R.I. & Tiirola, M. (2011). Methane oxidizing and photoautotrophic bacteria are major producers in a humic lake with large anoxic hypolimnion. Aquat Microb Ecol. 64: 81 95. 114 Syväranta, J., Högmander, P., Keskinen, T., Karjalainen, J. & Jones, R.I. (2011). Altered energy flow pathways in a lake ecosystem following manipulation of fish community structure. Aquat. Sci. 73: 79-89. 113 Kankaala, P., Taipale, S., Li, L. & Jones, R.I. (2010). Diets of crustacean zooplankton, inferred from stable carbon and nitrogen isotope analyses, in lakes with varying allochthonous dissolved organic carbon content. Aquat. Ecol.44: 781-795. 112 Bjurstöm, L., Ruokonen, T., Pursiainen, M., Jones, R.I. & Hämäläinen, H., (2010). Impacts of the invasive signal crayfish on littoral macroinvertebrates of large boreal lakes: a pilot 2

study in Lake Päijänne, Finland. Freshwater Crayfish 17: 177-182. 111 Rask, M., Verta, M., Korhonen, M., Salo, S., Forsius, M., Arvola,.L., Jones, R.I. & Kiljunen, K. (2010). Does lake thermocline depth affect methyl mercury concentrations in fish? Biogeochemistry 101: 311-322. 110 Kankaala, P., Peura, S., Nykänen, H., Sonninen, E., Taipale, S., Tiirola, M. & Jones, R.I. (2010), Impacts of added dissolved organic carbon on boreal freshwater pelagic metabolism and food webs in mesocosm experiments. Fund. Appl. Limnol. 177: 161-176. 109 Eloranta, A.P., Kahilainen, K.K. & Jones, R.I. (2010). Seasonal and onotogenetic shifts in the diet of Arctic charr (Salvelinus alpinus) in a subarctic lake. J. Fish Biol. 77: 80-97. 108 Ravinet, M., Syväranta, J., Jones, R.I. & Grey, J. (2010). Fish exploitation of methanederived carbon in a temperate lake system. Oikos 119: 409-416. 107 King, L., Maberly, S.C., De Ville, M.M., Kitschke, M., Gibson, C.E. & Jones, R.I. (2009). Nitrogen stable isotope ratios of lake macrophytes in relation to growth form and nutrientlimitation. Fund. Appl. Limnol. 175: 307-315. 106 Syväranta, J. & Jones, R.I. (2009). Isotopic variability in lake littoral organisms presents a challenge for food web studies. Verh. int. Ver. Limnol. 30: 1193-1196. 105. Taipale, S., Jones, R.I. & Tiirola, M. (2009). Vertical diversity of bacteria in an oxygenstratified humic lake evaluated using DNA and phospholipid analyses. Aquatic Microb. Ecol. 55: 1-16. 104 Lehtiniemi, M., Kiljunen, M. & Jones, R.I. (2009). Winter food utilisation by sympatric mysids in the Baltic Sea, studied by combined gut content and stable isotope analyses. Mar. Biol. 156: 619-628. 103 Taipale, S., Kankaala, P., Hämäläinen, H. & Jones, R.I. (2009). Seasonal shifts in the diet of lake zooplankton revealed by phospholipid fatty acid analysis. Freshwater Biol. 54: 90-104. 102 Kiljunen, M., Peltonen, H., Jones, R.I., Kiviranta, H., Vuorinen, P.J. Verta, M. & Karjalainen, J. (2008). Coupling stable isotopes with bioenergetics to evaluate sources of variation in organochlorine concentrations in Baltic salmon (Salmo salar L.). Can. J. Fish. Aquatic Sci. 65: 2114-2126. 101 Syväranta, J., Tiirola, M. & Jones, R.I. (2008). Seasonality in lake pelagic δ 15 N values: patterns, possible explanations, and implications for food web baselines. Fund. Appl. Limnol. 172/3: 255-262. 100 Syväranta, J., Keskinen, T., Hämäläinen, H., Karjalainen, J. & Jones, R.I. (2008). Use of stable isotope analysis to evaluate the possible impact of fish migration on a lake biomanipulation. Aquatic Conserv: Mar. Freshw. Ecosyst. 18: 703-713. 99 Kelly, M.G., King, L., Jones, R.I., Barker, P.A. & Jamieson, B.J. (2008). Validation of diatoms as proxies for phytobenthos when assessing ecological status in lakes. Hydrobiologia 610: 125-129. 98 Jones, R.I., Carter, C.E., Kelly, A., Ward, S., Kelly, D.J. & Grey, J. (2008). Widespread contribution of methane-cycle bacteria to the diets of lake profundal chironomid larvae. Ecology 89: 857-864. 97 Syväranta, J., Vesala, S., Rask, M., Ruuhijärvi, J. & Jones, R.I. (2008). Evaluating the utility of stable isotope analyses of archived freshwater sample materials. Hydrobiologia 600:121-130. 96 Taipale, S., Kankaala, P., Tiirola, M. & Jones, R.I. (2008). Whole-lake DI 13 C additions reveal seasonal shifts between multiple food source contributions to zooplankton diet. Ecology 89: 461-474. 3

95 Sinisalo, T., Jones, R.I., Helle, E. & Valtonen, E.T. (2008). Changes in diets of individual Baltic ringed seals (Phoca hispida botnica) during their breeding season inferred from stable isotope analysis of multiple tissues. Marine Mammal Sci. 24: 159-170. 94 Syväranta, J. & Jones, R.I. (2008). Changes in feeding niche widths of perch and roach following biomanipulation, revealed by stable isotope analysis. Freshwater Biol. 53: 425-434. 93 Taipale, S., Kankaala, P. & Jones, R.I. (2007). Contributions of different organic carbon sources to Daphnia in the pelagic foodweb of a small polyhumic lake: results from mesocosm DI 13 C-additions. Ecosystems 10: 757-772. 92 Kankaala, P., Eller, G. & Jones, R.I. (2007). Could bacterivorous zooplankton affect lake pelagic methanotrophic activity?. Fund. Appl. Limnol. 169: 203-209. 91 Kankaala, P., Taipale, S., Nykänen, H & Jones, R.I. (2007). Oxidation, efflux and isotopic fractionation of methane during autumnal turnover in a polyhumic, boreal lake. J. Geophys. Res.112, G02003, doi:10.1029/2006jg000336. 90 Rask, M., Jones, R.I., Järvinen, M., Paloheimo, A., Salonen, M., Syväranta, J. & Verta, M. (2007). Changes in fish mercury concentrations over 20 years in an acidified lake subject to experimental liming. Appl. Geochem. 22: 1229-1240. 89 Kiljunen, M., Vanhatalo, M., Mäntyniemi, S., Peltonen, H., Kuikka, S., Kiviranta, H., Parmanne, R., Tuomisto, J.T., Vuorinen, P.J., Hallikainen, A., Verta, M., Pönni, J., Jones, R.I. & Karjalainen, J. (2007). Human dietary intake of organochlorines from Baltic herring: Implications of individual fish variability and fisheries management. Ambio 36:257-264. 88 Jansson, M., Persson, L., De Roos, A.M., Jones, R.I. & Tranvik, L.J. (2007). Terrestrial carbon and intraspecific size-structure shape lake ecosystems. Trends in Ecology and Evolution 22: 316-322. 87 Clegg, M.R., Maberly, S.C. & Jones, R.I. (2007). Behavioral response as a predictor of seasonal depth distribution and vertical niche separation in freshwater phytoplanktonic flagellates. Limnol. Oceanogr. 52: 441-455. 86 Kiljunen, M., Grey, J., Sinisalo, T., Harrod, C., Immonen, H. & Jones, R.I. (2006). A revised model for lipid normalising δ 13 C values from aquatic organisms, with implications for isotope mixing models. J. Appl. Ecol. 43: 1213-1222. 85 Kankaala, P., Taipale, S., Grey, J., Sonninen, E., Arvola, L. & Jones, R.I. (2006). Experimental δ 13 C evidence for a contribution of methane to pelagic food webs in lakes. Limnol. Oceanogr. 51: 2821-2827. 84 Sinisalo, T., Valtonen, E.T., Helle, E. & Jones, R.I. (2006). Combining stable isotope and intestinal parasite information to evaluate dietary differences between individual ringed seals (Phoca hispida botnica). Can. J. Zool. 84; 823-831. 83 Syväranta, J., Hämäläinen, H. & Jones, R.I. (2006). Within lake variability in carbon and nitrogen stable isotope signatures. Freshwater Biol. 51: 1090-1102. 82 Thackeray, S.J., George, D.G., Jones, R.I., & Winfield, I.J. (2006). Statistical quantification of the effect of thermal stratification on patterns of dispersion in a freshwater zooplankton community. Aquatic Ecol. 40: 23-32. 81 Syväranta, J., Grey, J., Jones, R.I., Rask, M. & Salonen, M. (2006). The contribution of trophic position to mercury content of pike (Esox lucius) in small boreal lakes. Verh. int. Ver. Limnol. 29: 1757-1761. 4

80 Kiljunen, M., Rissanen, A. & Jones, R.I. (2006). Stable isotope analysis of two sympatric Baltic Mysis species. Verh. int. Ver. Limnol. 29: 1223-1227. 79 Thackeray, S.J., George, D.G., Jones, R.I., & Winfield, I.J. (2005). Vertical heterogeneity in zooplankton community structure: a variance partitioning approach. Archiv. Hydrobiol. 164: 257-275. 78 Jones, R.I. (2005). Limnology of humic waters: special theme or universal framework? Verh. int. Ver. Limnol. 29: 51-60. 77 Thackeray, S.J., George, D.G., Jones, R.I. & Winfield, I.J. (2004). Quantitative analysis of the importance of wind-induced circulation for the spatial structuring of planktonic populations. Freshwater Biol. 49: 1091-1102. 76 Kelly, A., Jones, R.I. & Grey, J. (2004). Stable isotope analysis provides fresh insights into dietary niche separation between Chironomus anthracinus and C. plumosus. J. N. Am. Benthol. Soc. 23: 287-296. 75 Grey, J., Kelly, A., Ward, S., Sommerwek, N. & Jones, R.I. (2004). Seasonal changes in the stable isotope values of lake-dwelling chironomid larvae in relation to feeding and life cycle variability. Freshwater Biol. 49: 681-689. 74 Grey, J., Kelly, A. & Jones, R.I. (2004). High intraspecific variability in carbon and nitrogen stable isotope ratios of lake chironomid larvae. Limnol. Oceanogr. 49: 239-244. 73 Jones, R.I. & Grey, J. (2004). Stable isotope analysis of chironomid larvae from some Finnish forest lakes indicates dietary contribution from biogenic methane. Boreal Env. Res. 9: 17-23. 72 Clegg, M.C., Maberly, S.C. & Jones, R.I. (2004). Dominance and compromise: the interaction of behavioural preferences for conflicting gradients in freshwater phytoplanktonic flagellates. Functional Ecol. 18: 371-380. 71 Clegg, M.C., Maberly, S.C. & Jones, R.I. (2004). Chemosensory behavioural response of freshwater phytoplanktonic flagellates. Plant Cell Env. 27: 123-135. 70 Jones, R.I., King, L., Dent, M.M., Maberly, S.C. & Gibson, C.E. (2004). Nitrogen stable isotope ratios in surface sediments, epilithon and macrophytes from upland lakes with differing nutrient status. Freshwater Biol. 49: 382-391. 69 Maberly, S.C., King, L., Gibson, C.E, May, L., Jones, R.I., Dent, M.M. & Jordan, C. (2003). Linking nutrient limitation and water chemistry in upland lakes to catchment characteristics. Hydrobiologia 506-509:83-91. 68 Millett, J., Jones, R.I. & Waldron, S. (2003). The contribution of insect prey to the total nitrogen content of sundews (Drosera spp.) determined in situ by stable isotope analysis. New Phytol. 158: 527-534. 67 Clegg, M.C., Maberly, S.C. & Jones, R.I. (2003). Behavioural responses of freshwater phytoplanktonic flagellates to a temperature gradient. Eur. J. Phycol. 38: 195-203. 66 Clegg, M.C., Maberly, S.C. & Jones, R.I. (2003). The effect of photon irradiance on the behavioral ecology and potential niche separation of freshwater phytoplanktonic flagellates. J. Phycol. 39: 650-662. 65 Maberly, S.C., King, L., Dent, M.M., Jones, R.I. & Gibson, C.E. (2002). Nutrient limitation of phytoplankton and periphyton growth in upland lakes. Freshwater Biol. 47: 2136-2152. 64 Grey, J., Thackeray, S.J., Jones, R.I. & Shine, A.J. (2002). Ferox trout (Salmo trutta) as 5

Russian Dolls : complementary gut content and stable isotope analyses of the Loch Ness food web. Freshwater Biol. 47: 1235-1243. 63 King, L., Jones, R.I. & Barker, P. (2002). Seasonal variation in the epilithic algal communities from four lakes of different trophic state. Archiv. Hydrobiol. 154: 177-198. 62 King, L., Jones, R.I. & Barker, P. (2002). Spatial variation in epilithic algal communities around an oligotrophic and a mesotrophic lake in the English Lake District. Verh. int. Ver. Limnol. 28: 455-461. 61 Jones, R.I. & Feuchtmayr, H. (2002). Nutrient limitation of bacterioplankton growth in three upland lakes. Verh. int. Ver. Limnol. 28: 97-101. 60 Jones, R.I., Grey, J., Quarmby, C. & Sleep, D. (2001). Sources and fluxes of inorganic carbon in a deep, oligotrophic lake (Loch Ness, Scotland). Global Biogeochem. Cycles 15: 863-870. 59 Grey, J., Jones, R.I. & Sleep, D. (2001). Seasonal changes in the importance of the source of organic matter to the diet of zooplankton in Loch Ness, as indicated by stable isotope analysis. Limnol. Oceanogr. 46: 505-513. 58 King, L., Barker, P. & Jones, R.I. (2000). Epilithic communities and their relationship to environmental variables in lakes of the English Lake District. Freshwater Biol. 45: 425-442. 57 Shaw, P.J., Jones, R.I. & De Haan, H. (2000). The influence of humic substances on the molecular size distributions of phosphate and iron in epilimnetic lake waters. Freshwater Biol. 45: 383-393. 56 Grey, J., Jones, R.I. & Sleep, D. (2000). Stable isotope analysis of the origins of zooplankton carbon in lakes of differing trophic state. Oecologia 123: 232-240. 55 Jones, R.I. (2000). Mixotrophy in planktonic protists: an overview. Freshwater Biol. 45: 219-226. 54 Jones, R.I. & Young, J.M. (2000). Control of bacterioplankton growth in three oligotrophic lakes of differing humic content. Verh. int. Ver. Limnol. 27: 2917-2921. 53 King, L., Jones, R.I. & Barker, P.A. (2000). Periphyton response to nutrient manipulation in an oligotrophic lake (Wastwater, English Lake District). Verh. int. Ver. Limnol. 27: 3154-3158. 52 Jones, R.I., Grey, J., Sleep, D. & Arvola, L. (1999). Stable isotope analysis of zooplankton carbon nutrition in humic lakes. Oikos 86: 97-104. 51 Grey, J. & Jones, R.I. (1999). Carbon isotope studies reveal complex trophic interactions in lake plankton. Rapid Commun. Mass Spectrom. 13: 1311-1314. 50 Head, R.M., Jones, R.I. & Bailey-Watts, A.E. (1999). An assessment of the influence of recruitment from the sediment on the development of planktonic populations of cyanobacteria in a temperate mesotrophic lake. Freshwater Biol. 41: 759-769. 49 Head, R.M., Jones, R.I. & Bailey-Watts, A.E. (1999). Vertical movements by planktonic cyanobacteria and the translocation of phosphorus: implications for lake restoration. Aquatic Conserv: Mar. Freshw. Ecosyst. 9: 111-120. 48 Jones, R.I., Grey, J., Sleep, D. & Quarmby, C. (1998). An assessment using stable isotopes of the importance of allochthonous organic carbon sources to the pelagic food web in Loch Ness. Proc. Royal Soc. B 265: 105-111. 47 Jones, R.I. & Young, J.M. (1998). Control of bacterioplankton growth and abundance in a 6

deep oligotrophic lake (Loch Ness, Scotland). Aquat. Microb. Ecol. 15: 15-24. 46 Cooper, M.C., O Sullivan, P.E., Harkness, D.D., Lawson, E.M., Bull, D., Kemp, A.E.S., Peglar, S.M., Matthews, N.M., Jones, R.I. & Shine, A.J. (1998). 14 C dating of laminated sediments from Loch Ness, Scotland. Radiocarbon 40: 781-793. 45 Head, R.M., Jones, R.I. & Bailey-Watts, A.E. (1998). Akinete germination and recruitment of planktonic cyanobacteria from lake sediments. Verh. int. Ver. Limnol. 26: 1711-1715. 44 Jones, R.I., Laybourn-Parry, J., Walton, M.C. & Young, J.M. (1997). The forms and distribution of carbon in a deep oligotrophic lake (Loch Ness, Scotland). Verh. int. Ver. Limnol. 26: 330-334. 43 Jones, R.I., Young, J.M., Hartley, A.M. & Bailey-Watts, A.E. (1996). Light limitation of phytoplankton development in an oligotrophic lake - Loch Ness, Scotland. Freshwater Biol. 35: 533-543. 42 Shaw, P.J., Jones, R.I. & De Haan, H. (1996). Contrasting experimental manipulations of the acidity of catchment drainage water: effects on interactions between humic substances, iron, and phosphate. Environment International 22: 611-618. 41 Jones, R.I., Fulcher, A., Jayakodi, U., Laybourn-Parry, J., Shine, A., Walton, M. & Young, J. (1995). The horizontal distribution of plankton in a deep, oligotrophic lake - Loch Ness, Scotland. Freshwater Biol. 33: 161-170. 40 Laybourn-Parry, J., Walton, M., Young, J., Jones, R.I. & Shine, A. (1994). Protozooplankton and bacterioplankton in a large oligotrophic lake - Loch Ness, Scotland. J. Plankton Res. 16: 1655-1670. 39 Young, J., Laybourn-Parry, J., Jones, R.I. & Walton, M. (1994). A stalkless sub-species of Clathrulina elegans Cienkowski (1867) from the plankton of Loch Ness, Scotland. Europ. J. Protistol. 31: 54-57. 38 Salonen, K., Jones, R.I., De Haan, H. & James, M. (1994). A radiotracer study of phosphorus uptake by plankton and redistribution within the water column of a small humic lake. Limnol. Oceanogr. 39: 69-83. 37 Jones, R.I. (1994). Mixotrophy in planktonic protists as a spectrum of nutritional strategies. Mar. microb. Food Webs. 8: 87-96. 36 Jones, R.I. & Rees, S. (1994). Characteristics of particle uptake by the phagotrophic phytoflagellate, Dinobryon divergens. Mar. microb. Food Webs. 8: 97-110. 35 Jones, R.I. & Rees, S. (1994). Influence of temperature and light on particle ingestion by the freshwater phytoflagellate Dinobryon. Archiv Hydrobiol. 132: 203-211. 34 Perriss, S.J., Laybourn-Parry, J. & Jones, R.I. (1994). Chlorophyll contents and photosynthetic rates of the mixotrophic ciliate Strombidium viridis (Ciliophora: Oligotrichida). Arch. Hydrobiol. 130: 473-483. 33 Väinölä, R., Riddoch, B.J., Ward, R.D. & Jones, R.I. (1994). Genetic zoogeography of the Mysis relicta species group in northern Europe and North America. Can. J. Fish. Aquatic Sci. 51: 1490-1505. 32 Shaw, P.J., De Haan, H. & Jones, R.I. (1994). Applicability and reliability of gel filtration to study aquatic humic substances revisited; the effects of ph on molecular size distributions. Environ. Technol. 15: 753-764. 7

31 Shaw, P.J., Jones, R.I. & De haan, H. (1994). Separation of molecular size classes of humic substances using ultrafiltration and dialysis. Environ. Technol. 15: 765-774. 30 Jones, R.I., Shaw, P.J. & De Haan, H. (1993). Effects of dissolved humic substances on the speciation of iron and phosphate at different ph and ionic strength. Environ. Sci. Technol. 27: 1052-1059. 29 Ojala, A. & Jones, R.I. (1993). Spring development and mitotic division pattern of a Cryptomonas sp. in an acidified lake. Eur. J. Phycol. 28: 17-24. 28 Jones, R.I. (1993) Phytoplankton migrations: patterns, processes and profits. Arch. Hydrobiol. Beih. Ergebn. Limnol. 39: 67-77. 27 Jones, R.I. (1992). The influence of humic substances on lacustrine planktonic food chains. Hydrobiologia 229: 73-91. 26 Jones, R.I. (1992). Phosphorus transformations in the epilimnia of small forest lakes. Hydrobiologia 243/244: 105-111. 25 Shaw, P.J., De Haan, H. & Jones, R.I. (1992). The effect of acidification on abiotic interactions of dissolved humic substances, iron and phosphate in epilimnetic water from the HUMEX Lake Skjervatjern. Environment. International 18: 577-588. 24 Jones, R.I. (1991). Advantages of diurnal vertical migrations to phytoplankton in sharply stratified, humic forest lakes. Arch. Hydrobiol. 120: 257-266. 23 Jones, R.I. (1990). Phosphorus transformations in the epilimnion of humic lakes: biological uptake of phosphate. Freshwater Biol. 23: 323-337. 22 Haan, H.De, Jones, R.I. & Salonen, K. (1990). Abiotic transformations of iron and phosphate in humic lake water, revealed by double isotope labelling and gel filtration. Limnol. & Oceanogr. 35: 491-497. 21 Jones, R.I., Salonen, K. & Haan, H.De. (1988). Phosphorus transformations in the epilimnion of humic lakes: abiotic interactions between dissolved humic materials and phosphate. Freshwater Biol. 19: 357-369. 20 Jones, R.I. (1988). Vertical distribution and diel migration of flagellated phytoplankton in a small humic lake. Hydrobiologia 161: 75-87. 19 Arvola, L., Salonen,K., Jones, R.I., Heinanen, A. & Bergström, I. (1987). A three day study of the diel behaviour of plankton in a highly humic and steeply stratified lake. Arch. Hydrobiol. 109: 89-106. 18 Haan, H.De., Jones, R.I. & Salonen, K. (1987). Does ionic strength affect the configuration of aquatic humic substances, as indicated by gel filtration? Freshwater Biol. 17: 453-459. 17 Jones, R.I. & Salonen, K. (1985). Bacterial utilization of released photosynthate in two humic forest lakes in southern Finland. Holarctic Ecol. 8: 133-140. 16 Jones, R.I. & Barrington, R.J. (1985). A study of the suspended algae in the River Derwent, Derbyshire, U.K. Hydrobiologia 128: 255-264. 15 Salonen, K., Jones, R.I. & Arvola, L. (1984). Hypolimnetic phosphorus retrieval by diel vertical migrations of lake phytoplankton. Freshwater Biol. 14: 431-438. 14 Jones, R.I. & Arvola, L. (1984). Light penetration and some related characteristics in small forest lakes in southern Finland. Verh. int. Ver. Limnol. 22: 811-816. 13 Jones, R.I. & Ilmavirta, V. (1983). Spatial heterogeneity of phytoplankton in the Lokka 8

reservoir, Finnish Lapland. Ann. bot. fenn. 20: 391-397. 12 Jones, R.I. & Francis, R.C. (1982). Dispersion patterns of phytoplankton in lakes. Hydrobiologia 86: 21-28. 11 Jones, R.I. (1979). Notes on the growth and sporulation of a natural population of Aphanizomenon flos-aquae. Hydrobiologia 62: 55-58. 10 Jones, R.I. (1978). Adaptations to fluctuating irradiance by natural phytoplankton communities. Limnol. Oceanogr. 23: 920-926. 9 Jones, R.I. & Ilmavirta. V. (1978). Vertical and seasonal variation of phytoplankton photosynthesis in a brownwater lake with winter ice cover. Freshwater Biol. 8: 561-572. 8 Jones, R.I. & Ilmavirta, V. (1978). A diurnal study of the phyto- plankton in the eutrophic lake Lovojärvi, southern Finland. Arch. Hydrobiol. 83: 494-514. 7 Jones, R.I. (1977). Factors controlling phytoplankton production and succession in a highly eutrophic lake (Kinnego Bay, Lough Neagh). I. The phytoplankton community and its environment. J. Ecol. 65: 547-559. 6 Jones, R.I. (1977). Factors controlling phytoplankton production and succession in a highly eutrophic lake (Kinnego Bay, Lough Neagh). II. Phytoplankton production and its chief determinants. J. Ecol. 65: 561-577. 5 Jones, R.I. (1977). Factors controlling phytoplankton production and succession in a highly eutrophic lake (Kinnego Bay, Lough Neagh). III. Interspecific competition in relation to irradiance and temperature. J. Ecol. 65: 579-586. 4 Jones, R.I. (1977). The importance of temperature conditioning to the respiration of natural phytoplankton communities. Br. phycol. J. 12: 277-285. 3 Ilmavirta, V., Jones, R.I. & Kairesalo, T. (1977). The structure and photosynthetic activity of pelagial and littoral phytoplankton communities in Lake Pääjärvi, southern Finland. Ann. bot. fenn. 14: 7-16. 2 Jones, R.I. (1977).A comparison of acetone and methanol as solvents for estimating the chlorophll a and phaeophytin a concentrations in phytoplankton. Ann. bot. fenn. 14: 65-69. 1 Ilmavirta, V. & Jones R.I. (1977). Factors affecting the 14C method of measuring phytoplankton production. Ann.bot. fenn. 14: 97-101. Edited Conference Proceedings 4 Ilmavirta, V. & Jones, R.I. (editors) (1992). The Dynamics and Use of Lacustrine Ecosystems. Developments in Hydrobiology. Kluwer Academic Publishers, Dordrecht, 498pp. 3 Salonen, K., Kairesalo, T. & Jones, R.I. (editors) (1992). Dissolved Organic Matter in Lacustrine Ecosystems: Energy Source and System Regulator. Developments in Hydrobiology. Kluwer Academic Publishers, Dordrecht, 291pp. 2 Jones, R.I. & Ilmavirta, V. (editors) (1988). Flagellates in Freshwater Ecosystems. Developments in Hydrobiology 45. Kluwer Academic Publishers, Dordrecht, 279pp. 1 Ilmavirta, V., Jones, R.I. & Persson, P.-E. (editors) (1982). Lakes and Water Management. Developments in Hydrobiology 7. Dr. W. Junk, The Hague, 222pp. 9

Articles in Books and Conference Proceedings 3 Jones, R.I. (1998). Chapter 7: Phytoplankton, primary production and nutrient cycling. In: Hessen, D.O. & Tranvik, L. (Editors) Aquatic Humic Substances: Ecology and Biogeochemistry. Ecological Studies 133, Springer-Verlag, pp 145-175. 2 Ward, R.D. & Jones, R.I. (1993). A note of genetic variation in Lough Neagh Mysis relicta. In: Wood, R.B. & Smith, R.V. (editors) Lough Neagh. Monographiae Biologicae, Kluwer Academic Publishers, Dordrecht, p. 336. 1 Jones, R.I. & Ilmavirta, V. (1988). Concluding remarks. In: Jones, R.I. & Ilmavirta, V. (editors) Flagellates in Freshwater Ecosystems. Developments in Hydrobiology 45. Kluwer Academic Publishers, Dordrecht, pp 271-274. Other articles and published abstracts 25 Clegg, M.R., Maberly, S.C. & Jones, R.I. (2003). Behavioural responses of freshwater flagellates: a new perspective on ecological distribution. The Phycologist 58 (Supplement): 2. 24 Burns, A.J., Jones, R.I. & Adamson, J.K. (2001). Stable isotope analysis of food web structure in upland rivers (Abstract). Verh. int. Ver. Limnol. 27: 3286. 23 King, L., Dent, M.M., Gibson, C.E., Jones, R.I. & Maberly, S.C. (2001). Paradigm lost:- does phosphorus limitation prevail in upland oligotrophic lakes? The Phycologist 64 (Supplement): 7. 22 Clegg, M.R., Maberly, S.C. & Jones, R.I. (2001). Behavioural ecology of freshwater phytoflagellates. The Phycologist 58 (Supplement): 20. 21 Thackeray, S.J., Grey, J. & Jones, R.I. (2000). Feeding selectivity in brown trout (Salmo trutta) in Loch Ness. Freshwater Forum 13: 47-59. 20 Jones, R.I. (2000). Cutting Edge. Times Higher Education Supplement, February 25. 19 Clegg, M.R., Maberly, S.C. & Jones, R.I. (2000). Effect of irradiance on the behavioural ecology of freshwater phytoplankton flagellates. The Phycologist 55 (Supplement): 22-23. 18 Jones, R.I. & Grey, J. (1999). Unravelling a mystery in Loch Ness. NERC News, Winter 1999: 8-9. 17 King, L., Jones, R.I. & Barker, P. (1999). Periphyton response to nutrient manipulation at Wastwater (English Lake District) (Abstract). The Phycologist 52 (Supplement): 11. 16 Watson, A.G., Jones, R.I. & Eccleston-Parry, J.D. (1999). Responses of phytoplankton communities, from two contrasting lakes, to a nutrient pulsed environment (Abstract). The Phycologist 52 (Supplement): 26. 15 King, L., Jones, R.I. & Barker, P. (1998). Periphyton response to nutrient manipulation in lakes of different trophic state (Abstract). The Phycologist 49: 37. 14 Watson, A.G., Jones, R.I. & Eccleston-Parry, J.D. (1998). Nutrient patchiness and phytoplankton competition (Abstract). The Phycologist 49: 42-43. 13 Watson, A.G., Jones, R.I. & Eccleston-Parry, J.D. (1997). Cell size, nutrient pulsing and competition for phosphorus. The Phycologist 46: 39. 12 Jones, R.I. & Young, J.M. (1996). Autotrophic picoplankton in Loch Ness, Scotland (Abstract). The Phycologist 43: 24. 10

11 Head, R.M., Jones, R.I. & Bailey-Watts, A.E. (1996). The distribution of Anabaena solitaria akinetes in the upper sediments of a small lake (Abstract). The Phycologist 43: 22. 10 Jones, R.I. (1995). Light, not phosphorus, limits phytoplankton in oligotrophic Loch Ness (Abstract). The Phycologist 40: 22-23. 9 Head, R.M., Jones, R.I. & Bailey-Watts, A.E. (1994). The role of recruitment from the benthos in the population dynamics of blue-green algae in a mesotrophic lake (Abstract). The Phycologist 37:44-45. 8 Jones, R.I., Shaw, P.J. & De Haan, H. (1993). Effects of dissolved humic substances on the speciation of iron and phosphate at different ph and ionic strength (Abstract). Verh. int. Ver. Limnol. 25: 163. 7 Young, J.M., Jones, R.I. & Bailey-Watts, A.E. (1993). Studies of the plankton of Loch Ness, Scotland. 1. Phytoplankton (Abstract). Verh. int. Ver. Limnol. 25: 458. 6 Shaw, P.J., Jones, R.I. & De Haan, H. (1993). Quantifying the effect of ph on the molecular size distribution of aquatic humic substances from Lake Skjervatjern after acidification. HUMOR/HUMEX Newsletter 1/1993: 4-5. 5 Shaw, P.J., Jones, R.I. & De Haan, H. (1992). The effect of ph on abiotic interactions between aquatic humic substances and nutrients. HUMOR/HUMEX Newsletter 1/1992: 2-3. 4 Rees, S. & Jones, R.I. (1992). Phagotrophic nutrition of phytoflagellates (Abstract). Br. phycol. J. 27: 100. 3 Shaw, P.J., Jones, R.I. & De Haan, H. (1992). The effect of acidification on abiotic interactions of dissolved humic substances, iron and phosphate in epilimnetic water from the HUMEX lake. HUMOR/HUMEX Newsletter 2/1992: 23. 2 Jones, R.I. & Shaw, P.J. (1991). Abiotic interactions between humic substances and nutrients: application of gel filtration. HUMOR/HUMEX Newsletter 1/1991: 25-27. 1 Jones, R.I. (1987). The influence of humic substances on phosphorus turnover in forest lakes. Bulletin Br. Ecol. Soc. 18: 19-21. Book Reviews 7 Jones, R.I. (1998). Review of Vegetation Processes in the Pelagic: A Model for Ecosystem Theory by C.S. Reynolds. J. Animal Ecol. 67: 161. 6 Jones, R.I. (1998). Review of Aquatic Photosynthesis by P.G. Falkowski and J.A. Raven. J. Exp. Bot. 49: 621. 5 Jones, R.I. (1996). Review of Algae: an Introduction to Phycology. by C. van den Hoek, D.G. Mann and H.M. Jahns. J. Exp. Bot. 47: 1811. 4 Jones, R.I. (1993). Review of The Biology of Free-living Heterotrophic Flagellates by D.J. Patterson and J. Larsen (Editors). Eur. J. Phycol., 28:199-200. 3 Jones, R.I. (1993). Review of Algae and Symbioses: Plants, Animals, Fungi, Viruses, Interactions Explored by W. Reisser (Editor). Eur. J. Phycol., 28: 201. 2 Jones, R.I. (1990). Review of Growth and Reproductive Strategies of Freshwater Phytoplankton by C.D. Sandgren (Editor). Br. phycol. J., 25:300. 1 Jones, R.I. (1985). Review of The Ecology of Freshwater Phytoplankton by C.S. Reynolds. 11

J. Ecol., 73: 722-723. Miscellaneous 3 Jones, R.I. (1993). Editorial. Eur. J. Phycol. 28: 1. 2 Jones, R.I. (1992). Environmental education and training in England. In: Proceedings of a Conference on "Requirements and Prospects for Science and Engineering Education and Training Raised by Environmental Issues", Helsinki, May 1991 Maj and Tor Nessling Foundation, Helsinki. 1 "Don's Diary". Times Higher Education Supplement 1981. 12